ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes
To whom correspondence should be addressed. Email alberto.paccanaro@rhul.ac.uk.
Gorde:
| Egile nagusia: | |
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| Beste egile batzuk: | , , |
| Formatua: | article |
| Hizkuntza: | ingelesa |
| Argitaratua: |
2025
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| Gaiak: | |
| Sarrera elektronikoa: | https://doi.org/10.1093/nar/gkaf368 http://hdl.handle.net/20.500.14066/4580 |
| Etiketak: |
Etiketarik gabe, Izan zaitez lehena erregistro honi etiketa jartzen!
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| _version_ | 1870612070139953152 |
|---|---|
| author | Báez Ferreira, Marcelo Julián |
| author2 | Jiménez Franco, Rubén Emilio Cernuzzi, Luca Carlo Paccanaro, Alberto |
| author2_role | author author author |
| author_browse | Báez Ferreira, Marcelo Julián Cernuzzi, Luca Carlo Jiménez Franco, Rubén Emilio Paccanaro, Alberto |
| author_facet | Báez Ferreira, Marcelo Julián Jiménez Franco, Rubén Emilio Cernuzzi, Luca Carlo Paccanaro, Alberto |
| author_role | author |
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| bitstream.url.fl_str_mv | http://repositorio.conacyt.gov.py/bitstream/20.500.14066/4580/1/ClusterONE%20Web%3a%20a%20tool%20for%20discovering%20and%20analyzing%20overlapping%20protein%20complexes.pdf http://repositorio.conacyt.gov.py/bitstream/20.500.14066/4580/2/license_rdf http://repositorio.conacyt.gov.py/bitstream/20.500.14066/4580/3/license.txt http://repositorio.conacyt.gov.py/bitstream/20.500.14066/4580/4/ClusterONE%20Web%2c%20a%20tool%20for%20discovering%20and%20analyzing%20overlapping%20protein%20complexes.jpg http://repositorio.conacyt.gov.py/bitstream/20.500.14066/4580/5/ClusterONE%20Web%3a%20a%20tool%20for%20discovering%20and%20analyzing%20overlapping%20protein%20complexes.pdf.txt |
| dc.contributor.other.es.fl_str_mv | Centro de Ingeniería para la Investigación, Desarrollo e Innovación Tecnológica |
| dc.creator.none.fl_str_mv | Báez Ferreira, Marcelo Julián Jiménez Franco, Rubén Emilio Cernuzzi, Luca Carlo Paccanaro, Alberto |
| dc.date.accessioned.none.fl_str_mv | 2025-05-28T18:50:51Z |
| dc.date.available.none.fl_str_mv | 2025-05-28T18:50:51Z |
| dc.date.issued.none.fl_str_mv | 2025-05-16 |
| dc.format.extent.es.fl_str_mv | 6 páginas |
| dc.identifier.citation.en.fl_str_mv | Baez, M., Jimenez, R., Cernuzzi, L., & Paccanaro, A. (2025). ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes. Nucleic Acids Research, Artículo gkaf368. https://doi.org/10.1093/nar/gkaf368 |
| dc.identifier.doi.es.fl_str_mv | 10.1093/nar/gkaf368 |
| dc.identifier.essn.es.fl_str_mv | 1362-4962 |
| dc.identifier.other.es.fl_str_mv | https://doi.org/10.1093/nar/gkaf368 |
| dc.identifier.uri.none.fl_str_mv | http://hdl.handle.net/20.500.14066/4580 |
| dc.language.iso.es.fl_str_mv | eng |
| dc.publisher.es.fl_str_mv | Oxford University Press |
| dc.relation.projectCONACYT.es.fl_str_mv | PINV01-719 PINV01-108 |
| dc.rights.*.fl_str_mv | Atribución 4.0 Internacional |
| dc.rights.accessRights.es.fl_str_mv | info:eu-repo/semantics/openAccess |
| dc.rights.copyright.es.fl_str_mv | © The Author(s) 2025. Published by Oxford University Press on behalf of Nucleic Acids Research. |
| dc.rights.uri.*.fl_str_mv | http://creativecommons.org/licenses/by/4.0/ |
| dc.subject.classification.es.fl_str_mv | 13. Avance general del conocimiento: I+D financiada con fuentes distintas a los FGU 13.2. I+D relativa a la Ingeniería 13.3. I+D relativa a las Ciencias Médicas |
| dc.subject.ocde.es.fl_str_mv | 3. Ciencias Médicas y de la Salud 3.1. Medicina Básica (anatomía, citología, fisiología, genética, farmacia, farmacología, toxicología, inmunología e inmunohematología, química clínica, microbiología clínica, patología) 3.3. Ciencias de la Salud (salud pública, medicina social, higiene, enfermería, epidemiología) |
| dc.subject.other.en.fl_str_mv | Computational biology Multiprotein complexes Biological phenomena Data interpretation, statistical Protein interaction maps Models, biological Data display |
| dc.subject.other.es.fl_str_mv | Biología computacional Complejos multiproteicos Fenómenos biológicos Interpretación estadística de datos Mapas de interacción de proteínas Modelos biológicos Presentación de datos |
| dc.title.es.fl_str_mv | ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes |
| dc.type.es.fl_str_mv | info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
| description | To whom correspondence should be addressed. Email alberto.paccanaro@rhul.ac.uk. |
| eu_rights_str_mv | openAccess |
| format | article |
| id | CONACYT_98577bcf6c5a618f79dfa1562dc8af10 |
| identifier_str_mv | Baez, M., Jimenez, R., Cernuzzi, L., & Paccanaro, A. (2025). ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes. Nucleic Acids Research, Artículo gkaf368. https://doi.org/10.1093/nar/gkaf368 10.1093/nar/gkaf368 1362-4962 |
| language | eng |
| network_acronym_str | CONACYT |
| network_name_str | Repositorio Institucional CONACYT |
| oai_identifier_str | oai:repositorio.conacyt.gov.py:20.500.14066/4580 |
| publishDate | 2025 |
| publishDateSort | 2025 |
| repository.mail.fl_str_mv | repositorio.institucional@conacyt.gov.py |
| repository.name.fl_str_mv | Repositorio Institucional CONACYT |
| repository_id_str | |
| rights_invalid_str_mv | Atribución 4.0 Internacional http://creativecommons.org/licenses/by/4.0/ © The Author(s) 2025. Published by Oxford University Press on behalf of Nucleic Acids Research. |
| spelling | ea8d21a4-4d37-4fb2-b665-65cf8ac1e7f06005be5b2d0-44b2-401a-8f50-21743dd6b2d260028060024e1bdd6-b0df-48fb-a39e-baec166f788d600Centro de Ingeniería para la Investigación, Desarrollo e Innovación Tecnológica2025-05-28T18:50:51Z2025-05-28T18:50:51Z2025-05-16Baez, M., Jimenez, R., Cernuzzi, L., & Paccanaro, A. (2025). ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes. Nucleic Acids Research, Artículo gkaf368. https://doi.org/10.1093/nar/gkaf368https://doi.org/10.1093/nar/gkaf368http://hdl.handle.net/20.500.14066/458010.1093/nar/gkaf3681362-4962To whom correspondence should be addressed. Email alberto.paccanaro@rhul.ac.uk.Protein–protein interactions (PPIs) are central to many cellular processes, and the assembly of proteins into complexes is essential for biological function. Clustering with overlapping neighborhood expansion (ClusterONE) has been successfully used to detect overlapping protein complexes in both weighted and unweighted PPI networks. Here, we present ClusterONE Web, a freely available, web-based tool that brings the functionality of ClusterONE into an accessible, user-friendly environment. The platform includes a database of preprocessed PPI datasets covering multiple organisms, reducing the need for manual data collection and preprocessing, while also allowing users to upload their own interaction data. Detected complexes are presented through an interactive interface, facilitating their exploration without requiring specialized software installation. The server also provides built-in Gene Ontology enrichment analysis to aid in the functional interpretation of identified complexes. ClusterONE Web is platform-independent and available at https://paccanarolab.org/clusteroneweb/.Consejo Nacional de Ciencia y TecnologíaPrograma Paraguayo para el Desarrollo de la Ciencia y Tecnología. Proyectos de investigación y desarrollo6 páginasengOxford University PressAtribución 4.0 Internacionalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccess© The Author(s) 2025. Published by Oxford University Press on behalf of Nucleic Acids Research.13. Avance general del conocimiento: I+D financiada con fuentes distintas a los FGU13.2. I+D relativa a la Ingeniería13.3. I+D relativa a las Ciencias MédicasBiología computacionalComplejos multiproteicosFenómenos biológicosInterpretación estadística de datosMapas de interacción de proteínasModelos biológicosPresentación de datosComputational biologyMultiprotein complexesBiological phenomenaData interpretation, statisticalProtein interaction mapsModels, biologicalData display3. Ciencias Médicas y de la Salud3.1. Medicina Básica (anatomía, citología, fisiología, genética, farmacia, farmacología, toxicología, inmunología e inmunohematología, química clínica, microbiología clínica, patología)3.3. Ciencias de la Salud (salud pública, medicina social, higiene, enfermería, epidemiología)ClusterONE Web: a tool for discovering and analyzing overlapping protein complexesinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionNucleic Acids ResearchPINV01-719PINV01-108Báez Ferreira, Marcelo JuliánJiménez Franco, Rubén EmilioCernuzzi, Luca CarloPaccanaro, AlbertoORIGINALClusterONE Web: a tool for discovering and analyzing overlapping protein complexes.pdfClusterONE Web: a tool for discovering and analyzing overlapping protein complexes.pdfArtículo científicoapplication/pdf1085658http://repositorio.conacyt.gov.py/bitstream/20.500.14066/4580/1/ClusterONE%20Web%3a%20a%20tool%20for%20discovering%20and%20analyzing%20overlapping%20protein%20complexes.pdf0582f41690dbcbaa9c368a1fda5d1028MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8908http://repositorio.conacyt.gov.py/bitstream/20.500.14066/4580/2/license_rdf0175ea4a2d4caec4bbcc37e300941108MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81698http://repositorio.conacyt.gov.py/bitstream/20.500.14066/4580/3/license.txt858b22fda432bd774e469302988c1974MD53THUMBNAILClusterONE Web, a tool for discovering and analyzing overlapping protein complexes.jpgClusterONE Web, a tool for discovering and analyzing overlapping protein complexes.jpgVista de primera página de artículo científicoimage/jpeg499247http://repositorio.conacyt.gov.py/bitstream/20.500.14066/4580/4/ClusterONE%20Web%2c%20a%20tool%20for%20discovering%20and%20analyzing%20overlapping%20protein%20complexes.jpg4b2b2c1b5c7856d71cacb79dc2181633MD54TEXTClusterONE Web: a tool for discovering and analyzing overlapping protein complexes.pdf.txtClusterONE Web: a tool for discovering and analyzing overlapping protein complexes.pdf.txtExtracted texttext/plain26113http://repositorio.conacyt.gov.py/bitstream/20.500.14066/4580/5/ClusterONE%20Web%3a%20a%20tool%20for%20discovering%20and%20analyzing%20overlapping%20protein%20complexes.pdf.txtf6e2730d493a6d4fad194b3812c5d307MD5520.500.14066/4580oai:repositorio.conacyt.gov.py:20.500.14066/45802026-02-12 19:30:41.429Repositorio Institucional CONACYTrepositorio.institucional@conacyt.gov.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 |
| spellingShingle | ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes Báez Ferreira, Marcelo Julián 13. Avance general del conocimiento: I+D financiada con fuentes distintas a los FGU 13.2. I+D relativa a la Ingeniería 13.3. I+D relativa a las Ciencias Médicas Biología computacional Complejos multiproteicos Fenómenos biológicos Interpretación estadística de datos Mapas de interacción de proteínas Modelos biológicos Presentación de datos Computational biology Multiprotein complexes Biological phenomena Data interpretation, statistical Protein interaction maps Models, biological Data display 3. Ciencias Médicas y de la Salud 3.1. Medicina Básica (anatomía, citología, fisiología, genética, farmacia, farmacología, toxicología, inmunología e inmunohematología, química clínica, microbiología clínica, patología) 3.3. Ciencias de la Salud (salud pública, medicina social, higiene, enfermería, epidemiología) |
| status_str | publishedVersion |
| title | ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes |
| title_full | ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes |
| title_fullStr | ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes |
| title_full_unstemmed | ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes |
| title_short | ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes |
| title_sort | ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes |
| topic | 13. Avance general del conocimiento: I+D financiada con fuentes distintas a los FGU 13.2. I+D relativa a la Ingeniería 13.3. I+D relativa a las Ciencias Médicas Biología computacional Complejos multiproteicos Fenómenos biológicos Interpretación estadística de datos Mapas de interacción de proteínas Modelos biológicos Presentación de datos Computational biology Multiprotein complexes Biological phenomena Data interpretation, statistical Protein interaction maps Models, biological Data display 3. Ciencias Médicas y de la Salud 3.1. Medicina Básica (anatomía, citología, fisiología, genética, farmacia, farmacología, toxicología, inmunología e inmunohematología, química clínica, microbiología clínica, patología) 3.3. Ciencias de la Salud (salud pública, medicina social, higiene, enfermería, epidemiología) |
| url | https://doi.org/10.1093/nar/gkaf368 http://hdl.handle.net/20.500.14066/4580 |